🔄 How to Move from Entra Connect Synced Users to Cloud-Only in Microsoft 365

If you’re done with on-premises Active Directory and ready to manage users entirely in Microsoft 365, you need to convert your synced users to cloud-only. This means disabling directory sync and letting Microsoft Entra (Azure AD) take full control of identity management.

No fluff — here’s exactly how to do it.


✅ Why Move to Cloud-Only?

When you’re using Entra Connect, all users synced from AD are read-only in the Microsoft 365 portal. You have to make changes in AD and let them sync up. If you’re decommissioning AD, this becomes a problem.

Going cloud-only lets you:

  • Manage users and groups directly in Microsoft 365
  • Shut down your on-prem sync server
  • Reduce complexity and maintenance

🔧 Step-by-Step: Disable Directory Sync

⚠️ Before you do this: Make sure your Entra Connect server is shut down or removed. If sync is still running, it can re-enable itself and start syncing again.

1. Install Microsoft Graph PowerShell Module

If it’s not installed already:

Install-Module Microsoft.Graph.Authentication

2. Connect to Microsoft Graph

Connect-MgGraph -Scopes "Organization.ReadWrite.All"

3. Get Your Tenant ID

$id = Get-MgOrganization | Select-Object -ExpandProperty Id

4. Disable Directory Sync

Update-MgOrganization -OrganizationId $id -OnPremisesSyncEnabled:$false

5. Confirm It’s Off

Get-MgOrganization | fl OnPremisesSyncEnabled

⏱️ What Happens Next?

  • User and group sync will stop.
  • Existing synced users will automatically become cloud-managed.
  • You can now manage them fully from the Entra or M365 admin portals.

It may take up to 72 hours for users to show as fully cloud-only, but most small tenants flip in under an hour.


📌 What to Expect

  • You’ll see the cloud icon next to user accounts in Entra/M365 instead of the sync icon.
  • Groups will become editable directly in the portal.
  • Group owners may be blank post-transition — you’ll need to reassign them manually if needed.

🔁 Want to Re-Enable Sync Later?

If you ever need to turn sync back on (not recommended unless you go back to using on-prem AD):

Update-MgOrganization -OrganizationId $id -OnPremisesSyncEnabled:$true

🧠 Final Thoughts

If you’re shutting down AD, do it right. Turn off sync, confirm your users are cloud-managed, and move forward with a simpler, more flexible identity model.

No more waiting on sync cycles or dealing with AD schema weirdness. Just fast, direct management from the cloud.

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